- This deposition contains experimental data collected at NCI station of PAL-XFEL. The experimental details are described in Park, J.-H.; Yun, J.-H.; Shi, Y.; Han, J.; Li, X.; Jin, Z.; Kim, T.; Park, J.; Park, S.; Liu, H.; Lee, W., Non-Cryogenic Structure and Dynamics of HIV-1 Integrase Catalytic Core Domain by X-ray Free-Electron Lasers. International Journal of Molecular Sciences 2019, 20, (8), 1943.
- Each folder contains serveral CXI files after hit-finding. The hit-finding process are done using ClickX software (https://lixx11.github.io/ClickX) with parameters below:
		'''
		adu per photon: 20
		background inner radius: 2
		background outer radius: 3
		background ratio: 0.7
		bin size: 4
		center:
		- 720
		- 720
		crop size: 7
		dataset: ts-data-PAL
		epsilon: 1.0e-05
		gaussian filter sigma: 1.0
		hit finder: snr model
		mask file: /xfel/ffhs/dat/ue_181014_SFX/proc/Click/mask/r0010-neab-sigma-bs.npy
		mask on: true
		max peaks: 500
		max pixels: 15
		merge flat peaks: false
		min distance: 10
		min gradient: 10.0
		min peaks: 20
		min pixels: 2
		min snr: 6.0
		peak refine mode: gradient
		signal radius: 1
		signal ratio: 0.2
		signal threshold: 5.0
		snr mode: adaptive
		'''
- The indexing and merge commands of CrystFEL software are as below:
		'''
		indexamajig -i $WORK_DIR/$i-events.lst -g $GEOM -p $CELL --indexing=mosflm,mosflm-nolatt,dirax --peaks=cxi -o $WORK_DIR/${i}.stream -j 24

		ambigator ccd.stream --operator=-h,-k,l -j 24 -o ccd-detwin1.stream

		ambigator ccd-detwin1.stream --operator=-k,-h,-l -j 24 -o ccd-detwin2.stream

		process_hkl -i ccd-detwin2.stream -o ccd.hkl -y 321_H --scale --max-adu=60000
		'''